专题:Protein Structure and Dynamics

This cluster of papers focuses on the prediction and analysis of protein structures using methods such as molecular dynamics simulations, force fields, homology modeling, and circular dichroism. It also explores topics related to intrinsically disordered proteins, enzyme catalysis, and the effects of macromolecular crowding on protein behavior.
最新文献
Pre-Committed Falsification Criteria: Glycerol Titration Test for Coherence Window Detection in Magnetic Tweezers Hopping Data

article Full Text OpenAlex

Unified modeling of 3D molecular generation via atomic interactions with PocketXMol

article Full Text OpenAlex

The allosteric landscape of the Src kinase

article Full Text OpenAlex

Atomic resolution ensembles of intrinsically disordered proteins with Alphafold

article Full Text OpenAlex

Using a GPT-5-driven autonomous lab to optimize the cost and titer of cell-free protein synthesis

article Full Text OpenAlex

Multiple protein structure alignment at scale with FoldMason

article Full Text OpenAlex

Guided Auxiliary Structure Discovery (GASD): A Symmetry-Constrained Method for Latent Structure Inference

article Full Text OpenAlex

Cooperative Native Contact Formation Facilitates Free Energy Barrier Crossing in Protein Folding

article Full Text OpenAlex

Protein foundation models: a comprehensive survey

article Full Text OpenAlex

Deep contrastive learning enables genome-wide virtual screening

article Full Text OpenAlex

近5年高被引文献
Accurate structure prediction of biomolecular interactions with AlphaFold 3

article Full Text OpenAlex 12658 FWCI2734.4415

ColabFold: making protein folding accessible to all

article Full Text OpenAlex 9456 FWCI772.8783

UCSF ChimeraX: Tools for structure building and analysis

article Full Text OpenAlex 3896 FWCI819.799

InterPro in 2022

article Full Text OpenAlex 2539 FWCI218.0567

Fast and accurate protein structure search with Foldseek

article Full Text OpenAlex 2246 FWCI327.675

AlphaFold Protein Structure Database in 2024: providing structure coverage for over 214 million protein sequences

article Full Text OpenAlex 1821 FWCI167.3998

De novo design of protein structure and function with RFdiffusion

article Full Text OpenAlex 1813 FWCI267.2129

AmberTools

article Full Text OpenAlex 1736 FWCI256.2764

Robust deep learning–based protein sequence design using ProteinMPNN

article Full Text OpenAlex 1719 FWCI124.0037

E(3)-equivariant graph neural networks for data-efficient and accurate interatomic potentials

article Full Text OpenAlex 1598 FWCI103.9484