专题:Protein Structure and Dynamics

This cluster of papers focuses on the prediction and analysis of protein structures using methods such as molecular dynamics simulations, force fields, homology modeling, and circular dichroism. It also explores topics related to intrinsically disordered proteins, enzyme catalysis, and the effects of macromolecular crowding on protein behavior.
最新文献
AlphaFold-RandomWalk and AlphaFold-Ensemble: Sampling Alternative Protein Conformations with Perturbed Versions of AlphaFold

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Hidden in protein sequences: Predicting cryptic binding sites

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Docking in the Dark: Insights into Protein–Protein and Protein–Ligand Blind Docking

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Martinize2 and Vermouth provide a unified framework for molecular topology generation

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CNNCaps-DBP: Leveraging protein language models with attention-augmented convolution for DNA-binding protein prediction

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Allosteric solution to the problems of undruggable targets, drug toxicity, and emerging resistance

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Enhanced Sampling in the Age of Machine Learning: Algorithms and Applications

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In situ characterization of mitochondrial Hsp60-Hsp10 chaperone complex under folding stress

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Navigating the landscape of protein folding and proteostasis: from molecular chaperones to therapeutic innovations

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Biophysical assessment of protein stability in ethanol-stressed environments via UV absorption and fluorescence spectroscopies

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近5年高被引文献
Accurate structure prediction of biomolecular interactions with AlphaFold 3

article Full Text OpenAlex 9769 FWCI4678.56846716

ColabFold: making protein folding accessible to all

article Full Text OpenAlex 8875 FWCI1092.4849154

UCSF ChimeraX: Tools for structure building and analysis

article Full Text OpenAlex 3143 FWCI1011.5223676

InterPro in 2022

article Full Text OpenAlex 2389 FWCI308.53437906

Fast and accurate protein structure search with Foldseek

article Full Text OpenAlex 1931 FWCI354.07346736

AlphaFold Protein Structure Database in 2024: providing structure coverage for over 214 million protein sequences

article Full Text OpenAlex 1497 FWCI200.48658201

De novo design of protein structure and function with RFdiffusion

article Full Text OpenAlex 1478 FWCI274.23519207

Robust deep learning–based protein sequence design using ProteinMPNN

article Full Text OpenAlex 1443 FWCI174.63513518

AmberTools

article Full Text OpenAlex 1397 FWCI259.38155946

E(3)-equivariant graph neural networks for data-efficient and accurate interatomic potentials

article Full Text OpenAlex 1380 FWCI167.89712256