专题:Gene Regulatory Network Analysis

This cluster of papers focuses on the stochastic behavior and regulation of gene networks, exploring topics such as stochastic gene expression, synthetic biology, cellular noise, network inference, genetic circuits, biochemical modeling, cell signaling dynamics, and single-cell analysis. The research delves into understanding the inherent stochasticity in gene regulatory networks and its implications for cellular functions.
最新文献
Large-scale foundation model on single-cell transcriptomics

article Full Text OpenAlex

Fixed node determination and analysis in directed acyclic graphs of structured networks

article Full Text OpenAlex

Reading the palimpsest of cell interactions: What questions may we ask of the data?

review Full Text OpenAlex

Cis-regulatory control of transcriptional timing and noise in response to estrogen

article Full Text OpenAlex

Spatial transcriptome-guided multi-scale framework connects P. aeruginosa metabolic states to oxidative stress biofilm microenvironment

article Full Text OpenAlex

CPPLS-MLP: a method for constructing cell–cell communication networks and identifying related highly variable genes based on single-cell sequencing and spatial transcriptomics data

article Full Text OpenAlex

Stochastic basins of attraction for uncertain initial conditions

article Full Text OpenAlex

The Hill function is the universal Hopfield barrier for sharpness of input–output responses

article Full Text OpenAlex

The art of modeling gene regulatory circuits

article Full Text OpenAlex

Exact Power Spectrum in a Minimal Hybrid Model of Stochastic Gene Expression Oscillations

article Full Text OpenAlex

近5年高被引文献
Single-cell chromatin state analysis with Signac

article Full Text OpenAlex 1533 FWCI107.67579968

Robust decomposition of cell type mixtures in spatial transcriptomics

article Full Text OpenAlex 1129 FWCI80.95191462

Methods and applications for single-cell and spatial multi-omics

review Full Text OpenAlex 923 FWCI170.44543421

Confronting false discoveries in single-cell differential expression

article Full Text OpenAlex 855 FWCI65.93192082

CellRank for directed single-cell fate mapping

article Full Text OpenAlex 672 FWCI81.10257511

A Python library for probabilistic analysis of single-cell omics data

letter Full Text OpenAlex 657 FWCI81.34871343

Unsupervised removal of systematic background noise from droplet-based single-cell experiments using CellBender

article Full Text OpenAlex 591 FWCI111.40224458

Probabilistic harmonization and annotation of single‐cell transcriptomics data with deep generative models

article Full Text OpenAlex 564 FWCI39.11050333

Comparison and evaluation of statistical error models for scRNA-seq

article Full Text OpenAlex 540 FWCI66.21120699

Dissecting cell identity via network inference and in silico gene perturbation

article Full Text OpenAlex 495 FWCI86.33673955