专题：Algorithms and Data Compression

This cluster of papers focuses on the development and optimization of algorithms for compressing and indexing text data, with applications to genomic data, string matching, suffix arrays, and entropy-based compression techniques.
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Ultrafast one‐pass FASTQ data preprocessing, quality control, and deduplication using fastp

article Full Text OpenAlex 2155 FWCI196.8586

Mathematical discoveries from program search with large language models

article Full Text OpenAlex 455 FWCI62.9153

Combinatorics of Permutations

book Full Text OpenAlex 422 FWCI8.625

Symphonizing pileup and full-alignment for deep learning-based long-read variant calling

article Full Text OpenAlex 421 FWCI25.3026

NextDenovo: an efficient error correction and accurate assembly tool for noisy long reads

article Full Text OpenAlex 413 FWCI89.6385

BWA-MEME: BWA-MEM emulated with a machine learning approach

article Full Text OpenAlex 330 FWCI23.7792

Indonesian Journal of Electrical Engineering and Computer Science

paratext Full Text OpenAlex 318 FWCI0

Long-read mapping to repetitive reference sequences using Winnowmap2

article Full Text OpenAlex 293 FWCI21.882

A Survey on RAG with LLMs

conference-paper Full Text OpenAlex 217 FWCI70.2798

fastp 1.0: An ultra‐fast all‐round tool for FASTQ data quality control and preprocessing

article Full Text OpenAlex 213 FWCI222.1198