专题：Algorithms and Data Compression

This cluster of papers focuses on the development and optimization of algorithms for compressing and indexing text data, with applications to genomic data, string matching, suffix arrays, and entropy-based compression techniques.
最新文献
Binary Diffing via Library Signatures

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MBGC2: Boosting compression via efficient encoding of approximate matches in genome collections

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Packed Bit-Width Anagram Hashing: A Constant-Time Comparison Algorithm for Anagram Equivalence

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Design and Analysis of a Configurable Dual-Path Huffman-Arithmetic Encoder with Frequency-Based Sorting

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Bancroft: Genomics Acceleration Beyond On-Device Memory

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Deep Discrete Encoders: Identifiable Deep Generative Models for Rich Data with Discrete Latent Layers

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Faster Positional‐Population Counts for AVX2, AVX‐512, and ASIMD

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FroM Superstring to Indexing: a space-efficient index for unconstrained k -mer sets using the Masked Burrows-Wheeler Transform (MBWT)

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HP-MDR: High-performance and Portable Data Refactoring and Progressive Retrieval with Advanced GPUs

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What to Support When You’re Compressing

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近5年高被引文献
Ultrafast one‐pass FASTQ data preprocessing, quality control, and deduplication using fastp

article Full Text OpenAlex 1668 FWCI261.6768

Combinatorics of Permutations

book Full Text OpenAlex 413 FWCI6.2292

Symphonizing pileup and full-alignment for deep learning-based long-read variant calling

article Full Text OpenAlex 360 FWCI28.2003

NextDenovo: an efficient error correction and accurate assembly tool for noisy long reads

article Full Text OpenAlex 337 FWCI113.5169

Indonesian Journal of Electrical Engineering and Computer Science

paratext Full Text OpenAlex 318 FWCI0

Mathematical discoveries from program search with large language models

article Full Text OpenAlex 284 FWCI56.9208

BWA-MEME: BWA-MEM emulated with a machine learning approach

article Full Text OpenAlex 282 FWCI26.2913

Long-read mapping to repetitive reference sequences using Winnowmap2

article Full Text OpenAlex 271 FWCI23.9483

Carving out OPE space and precise O(2) model critical exponents

article Full Text OpenAlex 179 FWCI0

StainedGlass: interactive visualization of massive tandem repeat structures with identity heatmaps

article Full Text OpenAlex 177 FWCI26.4898