专题：Algorithms and Data Compression

This cluster of papers focuses on the development and optimization of algorithms for compressing and indexing text data, with applications to genomic data, string matching, suffix arrays, and entropy-based compression techniques.
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Ultrafast one‐pass FASTQ data preprocessing, quality control, and deduplication using fastp

article Full Text OpenAlex 1987 FWCI269.91

Combinatorics of Permutations

book Full Text OpenAlex 421 FWCI7.6667

Symphonizing pileup and full-alignment for deep learning-based long-read variant calling

article Full Text OpenAlex 396 FWCI27.3116

NextDenovo: an efficient error correction and accurate assembly tool for noisy long reads

article Full Text OpenAlex 386 FWCI103.2103

Mathematical discoveries from program search with large language models

article Full Text OpenAlex 354 FWCI61.3647

Indonesian Journal of Electrical Engineering and Computer Science

paratext Full Text OpenAlex 318 FWCI0

BWA-MEME: BWA-MEM emulated with a machine learning approach

article Full Text OpenAlex 312 FWCI26.2516

Long-read mapping to repetitive reference sequences using Winnowmap2

article Full Text OpenAlex 281 FWCI23.6869

Tutorial on PCA and approximate PCA and approximate kernel PCA

article Full Text OpenAlex 200 FWCI22.0331

Carving out OPE space and precise O(2) model critical exponents

article Full Text OpenAlex 182 FWCI0