专题：Single-cell and spatial transcriptomics

This cluster of papers focuses on the comprehensive integration and analysis of single-cell transcriptomic data, covering topics such as cell types, spatial profiling, lineage tracking, data integration, gene expression, and cell heterogeneity. The research explores various technologies and computational methods to study the transcriptomic landscape at the single-cell level.
最新文献
Efficient differential expression analysis of large-scale single-cell transcriptomics data using Dreamlet

article Full Text OpenAlex

Large-scale, spatially resolved panoramic CRISPR screening in native tissue environments using Perturb-DBiT

article Full Text OpenAlex

Mapping plant cell-type-specific responses to environmental stresses

review Full Text OpenAlex

Evaluating the Utilities of Foundation Models in Single‐Cell Data Analysis

article Full Text OpenAlex

Impact and correction of segmentation errors in spatial transcriptomics

article Full Text OpenAlex

Spatial omics at the forefront: emerging technologies, analytical innovations, and clinical applications

review Full Text OpenAlex

Pertpy: an end-to-end framework for perturbation analysis

article Full Text OpenAlex

AI-driven virtual cell models in preclinical research: technical pathways, validation mechanisms, and clinical translation potential

review Full Text OpenAlex

Novae: a graph-based foundation model for spatial transcriptomics data

article Full Text OpenAlex

Multimodal AI generates virtual population for tumor microenvironment modeling

article Full Text OpenAlex

近5年高被引文献
Dictionary learning for integrative, multimodal and scalable single-cell analysis

article Full Text OpenAlex 5579 FWCI497.5844

Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays

article Full Text OpenAlex 1782 FWCI104.5412

CellChat for systematic analysis of cell–cell communication from single-cell transcriptomics

article Full Text OpenAlex 1440 FWCI196.0556

scGPT: toward building a foundation model for single-cell multi-omics using generative AI

article Full Text OpenAlex 1404 FWCI187.0572

CellMarker 2.0: an updated database of manually curated cell markers in human/mouse and web tools based on scRNA-seq data

article Full Text OpenAlex 1286 FWCI76.9358

Single‐cell RNA sequencing technologies and applications: A brief overview

review Full Text OpenAlex 1285 FWCI26.7688

Cell2location maps fine-grained cell types in spatial transcriptomics

article Full Text OpenAlex 1275 FWCI73.9956

Museum of spatial transcriptomics

review Full Text OpenAlex 1251 FWCI24.9175

Methods and applications for single-cell and spatial multi-omics

review Full Text OpenAlex 1234 FWCI32.7143

GSEApy: a comprehensive package for performing gene set enrichment analysis in Python

article Full Text OpenAlex 1202 FWCI62.6431