专题：Genome Rearrangement Algorithms

This cluster of papers focuses on the study of genomic rearrangements, evolutionary genomics, and ancestral genome reconstruction. It explores topics such as comparative genomics, chromosome evolution, phylogenetic analysis based on gene order, genome distance estimation, breakpoint reuse in evolution, and the role of duplications and inversions in shaping genomes.
最新文献
A Parallel and Distributed Genetic Algorithm in Rust for the DNA Fragment Assembly Problem

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An Exact Framework for Solving the Space-Time Dependent TSP

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Order-Dependent dissimilarity measures on phylogenetic trees

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Organelle genomes as universal standard for phylogenetics: a sociotechnical perspective

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Highly accurate ab initio gene annotation with ANNEVO

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A Genome-Wide Pseudogene Map Reveals the Asymmetric Evolution of the A, B, and D Subgenomes in Common Wheat

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MycoMobilome: a community-focused non-redundant database of transposable element consensus sequences for the fungal kingdom

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The Impact of Incomplete Taxon Sampling on Inference of Gene Flow by Bayesian and Summary Methods Using Genomic Sequence Data

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OrthoGarden: a pipeline for propagating phylogenetic trees for nonmodel organisms from short reads and de novo genome assemblies

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GeneMiner2 : Accurate and Automated Recovery of Genes From Genome Skimming Data

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近5年高被引文献
Gfastats: conversion, evaluation and manipulation of genome sequences using assembly graphs

article Full Text OpenAlex 992 FWCI69.9388

Protein-to-genome alignment with miniprot

article Full Text OpenAlex 413 FWCI61.2329

compleasm: a faster and more accurate reimplementation of BUSCO

article Full Text OpenAlex 332 FWCI49.1847

plotsr: visualizing structural similarities and rearrangements between multiple genomes

article Full Text OpenAlex 322 FWCI57.0398

Pangenome graph construction from genome alignments with Minigraph-Cactus

article Full Text OpenAlex 290 FWCI44.0996

ODGI: understanding pangenome graphs

article Full Text OpenAlex 198 FWCI16.1197

NGenomeSyn: an easy-to-use and flexible tool for publication-ready visualization of syntenic relationships across multiple genomes

article Full Text OpenAlex 155 FWCI23.119

CPJSdraw: analysis and visualization of junction sites of chloroplast genomes

article Full Text OpenAlex 153 FWCI23.119

CAGECAT: The CompArative GEne Cluster Analysis Toolbox for rapid search and visualisation of homologous gene clusters

article Full Text OpenAlex 133 FWCI19.666

Movable-Antenna Position Optimization: A Graph-Based Approach

article Full Text OpenAlex 127 FWCI42.2989