专题:Genome Rearrangement Algorithms

This cluster of papers focuses on the study of genomic rearrangements, evolutionary genomics, and ancestral genome reconstruction. It explores topics such as comparative genomics, chromosome evolution, phylogenetic analysis based on gene order, genome distance estimation, breakpoint reuse in evolution, and the role of duplications and inversions in shaping genomes.
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A Categorical Framework for Modeling Biological Systems: Phylogenetics as a Quotient Category

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The Intercalation Enumeration: A 50,388-Placement Exhaustive Test of the Window Property Under Observational Intercalation

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Mapping 3D genome organization at nucleosome-scale with Micro-C and Region Capture Micro-C (RCMC)

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Rethinking metagenome-assembled genome completeness: are we truly recovering complete genomes?

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BEAGLE 4.1: A high-performance library for computation on phylogenetic trees across diverse parallel architectures

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The Vertebrate Genomes Project Phase I: A global reference genome resource

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OrthoFinder: improved phylogenetic orthology inference with enhanced accuracy and scalability

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Statistical inference of the Tree of Blobs of a phylogenetic network from quartet concordance factors

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Transposable elements as catalysts of evolutionary innovation

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A comprehensive analysis of 14 chloroplast genomes from the subfamily Apocynoideae (Apocynaceae)

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